Scaffold Ga0123357

Basic Information
Taxon OID	3300009784 Open in IMG/M
Scaffold ID	Ga0123357_10012591 Open in IMG/M
Source Dataset Name	Embiratermes neotenicus P4 segment gut microbial communities from Petit-Saut dam, French Guiana - Emb289 P4
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300009784 Open in IMG/M

Scaffold ID

Ga0123357_10012591 Open in IMG/M

Source Dataset Name

Embiratermes neotenicus P4 segment gut microbial communities from Petit-Saut dam, French Guiana - Emb289 P4

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	10917
Total Scaffold Genes	30 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	23 (76.67%)
Novel Protein Genes	20 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	16 (80.00%)
Associated Families	3

Scaffold Components

Scaffold Length (bps)

10917

Total Scaffold Genes

30 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

23 (76.67%)

Novel Protein Genes

20 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

16 (80.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Host-Associated → Arthropoda → Digestive System → Gut → Unclassified → Termite Gut → Cubitermes And Nasutitermes Termite Gut Microbial Communities From Max Planck Institute For Terrestrial Microbiology, Germany

Source Dataset Ecosystem

Host-Associated → Arthropoda → Digestive System → Gut → Unclassified → Termite Gut → Cubitermes And Nasutitermes Termite Gut Microbial Communities From Max Planck Institute For Terrestrial Microbiology, Germany

Source Dataset Sampling Location
Location Name	Petit - Saut dam, French Guiana
Coordinates	Lat. (^o)	5.0626	Long. (^o)	-53.0462	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Petit - Saut dam, French Guiana

Coordinates

Lat. (^o)

5.0626

Long. (^o)

-53.0462

Alt. (m)

Depth (m)

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F004007	Metagenome	457	Y
F008821	Metagenome	327	Y
F019492	Metagenome	229	Y

Family

Sequences

Protein ID	Family	RBS	Sequence
Ga0123357_1001259111	F008821	AGG	VKWRFCLQLLQYCYITVLWIHGLTAMLLLQDRWDIAVLPAVTVVLLHYSAMDTGTDRNIISTG*
Ga0123357_1001259113	F019492	AGGA	MLWIHGPPAMLLVQGRGEMVVLPAVTAILLHHRDMDSGTDCNIVGTEGRGNGGSACSYCNTITSP*
Ga0123357_1001259115	F019492	N/A	MLWIYGLPAMLLVQGRGEMAVLPAVTAVLLHHSAMDTGTDRNIVSTGKRGNGGSACIYCSTVTSLCYGYRDWLQCTKYRVERK*
Ga0123357_1001259116	F019492	GGA	MTAMLLVQGRGEVAVLPAVSSVHFHHSAMGTGTDRNSVSTGYRGNVGSACSYCNTVISHSFGYMD*
Ga0123357_1001259118	F004007	GGA	MLFVEVRGEMAVLPAVTVVLLHQNAMDIWTDSNVVSRG*
Ga0123357_1001259119	F004007	GGA	MLLVEGRGELAVLPAVTVVLLHQSAMDIWTDSNVVRRG*
Ga0123357_100125912	F004007	GGA	MLLVQVRGEIAVLSAFPAVLLQHRPMDTWTDCNFVSTG*
Ga0123357_1001259120	F004007	GGA	MLLVEVRGEMAVLPAVTVVLLHQSAMDIWTKSNVVSRG*
Ga0123357_1001259121	F004007	GGA	MLLVEGRREMEVLPAVTVVLLHQSDMDIWTDSNVVSRG*
Ga0123357_1001259122	F004007	N/A	VLQIYELTVMLLVEGRGEIAVLSAVTAVLLHHSAMDIWTDSNVVSRG*
Ga0123357_1001259124	F019492	GAG	MAVLPAVTSIFYIKMLWIHGLPAILLVQFRGEMAVPPAVTAVLLYHSAMDTGTDSNIFSTGYRGNGGSACCYCSTVTSQCYGYRY*
Ga0123357_1001259125	F008821	GGA	MQLPQYCYIIVLWIHGLTAIMLVQGRGEMAVLPAVMAVLLHHSAMDTWIYCGVVNTG*
Ga0123357_1001259126	F004007	GGA	MMLVQGRGEMAVLHAVTAILLHHIAMDIGTASKIVSTG*
Ga0123357_1001259127	F019492	GGA	MLLVQGTGEMAVSSAVTAVLLHHSAMDIWTACNVVSTRYRGNGGTACSYCSTFTSQRYGYMDCLQ*
Ga0123357_1001259128	F019492	GGA	MMLVQGRGEMAVLPAVTAVQIYDSVMDIWTACNVVSTGYRGNGGTACSYCSTFTSQRYGYMDCLQCC*
Ga0123357_1001259129	F019492	GGA	MLLVQGTGEMAVLSAVTAVLLHHSAMDIWTACNVVSTGYRGNGGSACSYCSTFTSQRYGYMDSLQ*
Ga0123357_1001259130	F019492	AGTAGG	MAVVSAVTEVLLYHSAMDIWTACNVVSRGYRGNGGSVCSYCSTVTSQRYGYMDCLQCC*
Ga0123357_100125915	F019492	N/A	MLLVQGTGEKAVLSAVNAVLIHHIAMDTWTYCGVVNAGKRGNRGSVCSYCSTVTSQCYVYMDGLQFC*
Ga0123357_100125917	F019492	N/A	MYNVEGNLRFCLQLLQYRYIIVLCKHGLTAVYLVQARGEMAFLPAVTAVLLHHIALDTGTDCNFVSTGKRGNGVPVCSYCSSVTSHCSGYMD*
Ga0123357_100125919	F019492	GGA	MLLVRGRGKMAVQPAVTSVLLHHSAIDTGTCCGVVSTGWSVNGVSACSYCSTANLNSMDN

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0123357_10012591

Overview

Ecosystem & Geography

Associated Families

Sequences