NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0115001_10077419

Scaffold Ga0115001_10077419


Overview

Basic Information
Taxon OID3300009785 Open in IMG/M
Scaffold IDGa0115001_10077419 Open in IMG/M
Source Dataset NameMarine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB8_130
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2182
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (50.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean

Source Dataset Sampling Location
Location NameArctic Ocean: Canada Basin
CoordinatesLat. (o)77.0991Long. (o)-150.2252Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F010615Metagenome / Metatranscriptome301Y
F055556Metagenome / Metatranscriptome138N
F085166Metagenome / Metatranscriptome111N

Sequences

Protein IDFamilyRBSSequence
Ga0115001_100774192F010615AGGMKTIQLEGIELRPNKYFDITVEAEAVTTQCECSSEAGESEVTEAWEERDLDGFEIVSLVYWPNDDTPIDLPTIVLTHDDRATIFEETLRYI*
Ga0115001_100774193F055556N/AMKNRKENTNLDHLVKGGEKIFYSACVVLACCLGGSIMLLLAALIAKF*
Ga0115001_100774195F085166N/AMSTENTENTELETLQRSAEEVLHFIAEEQLRFVWVVAMIPGSSQSTLGQDTLLIIDQNNIELFAGRFIAESEQRIDILREGVEFIMDQEEL*
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