NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0114999_10027185

Scaffold Ga0114999_10027185


Overview

Basic Information
Taxon OID3300009786 Open in IMG/M
Scaffold IDGa0114999_10027185 Open in IMG/M
Source Dataset NameMarine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB8_126
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5596
Total Scaffold Genes13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)10 (76.92%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → Viruses → environmental samples → uncultured marine virus(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean

Source Dataset Sampling Location
Location NameArctic Ocean: Canada Basin
CoordinatesLat. (o)77.0991Long. (o)-150.2252Alt. (m)Depth (m)213
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002078Metagenome / Metatranscriptome596Y
F029567Metagenome / Metatranscriptome188Y
F035963Metagenome171Y

Sequences

Protein IDFamilyRBSSequence
Ga0114999_1002718510F035963GGAVDKINEVVIAVSSGTLGICLWICKRMFKSIDIAHERLDKLESKQVDKQYLENQLSPIRVDVNIILQHLLANKNREK*
Ga0114999_100271858F029567N/ALTGCSGTLTQLIAPLTTFGLGLYNADSYYSKECVWYEPVKFSPDTKEWLRSTNPPKHVIKDVAKVARNNDIFKEVCK*
Ga0114999_100271859F002078GGAGMEMIMNQSWFQIAGEIVLMFTALTGAMPDRFVNKIPVLGKLWPIFNWLAGNVFNNVNHPKGMAALSEVEDELDKAKAEVRNRVKLPDVLDGV*
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