Scaffold Ga0114999_10397687

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0114999_10397687

Scaffold Ga0114999_10397687

Overview

Basic Information
Taxon OID	3300009786 Open in IMG/M
Scaffold ID	Ga0114999_10397687 Open in IMG/M
Source Dataset Name	Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB8_126
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1085
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	4 (100.00%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (100.00%)
Associated Families	3

Taxonomy
All Organisms → Viruses → Predicted Viral	(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean

Source Dataset Sampling Location
Location Name	Arctic Ocean: Canada Basin
Coordinates	Lat. (^o)	77.0991	Long. (^o)	-150.2252	Alt. (m)		Depth (m)	213
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F023448	Metagenome / Metatranscriptome	210	Y
F023958	Metagenome	208	Y
F069347	Metagenome	124	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114999_103976872	F069347	GGA	MRPTKRAKVHRIKPEISKLKKLKERINAVYNHRLDDTGELKGDKTWVMEEIDNLKNGGWLTAVNMKVANEMWSKYGG*
Ga0114999_103976873	F023448	GGAG	MYSHDNVIEKINKLKYRITFATHGTQEPTELKDVVWCKRLLDDVENSGLVPSKEEFTMANLMWNKYSSSPTDNRKSTEENMWKLIDSMLTQENPTKIGAIKMYRRFIDSTLREAKEMVDAREIKIKRGW*
Ga0114999_103976874	F023958	AGGA	MYAQFSDMIKAYEMIITAKSSGLDLWEGIMLALFILKDVAIVGGILGTIIWYVRRRDGWE

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