NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0114999_10724082

Scaffold Ga0114999_10724082


Overview

Basic Information
Taxon OID3300009786 Open in IMG/M
Scaffold IDGa0114999_10724082 Open in IMG/M
Source Dataset NameMarine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB8_126
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)742
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean

Source Dataset Sampling Location
Location NameArctic Ocean: Canada Basin
CoordinatesLat. (o)77.0991Long. (o)-150.2252Alt. (m)Depth (m)213
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000379Metagenome / Metatranscriptome1211Y
F096209Metagenome / Metatranscriptome105N

Sequences

Protein IDFamilyRBSSequence
Ga0114999_107240821F000379N/AMNKGVEHMKTGLEKIDYSNKHGIMVGYIDGSQNVSAVETGWKSSYTAMAQILLNKYPTKEDAIKLVDSPILMPTFKKDDYCYVDGFGDVIESNLSWNKEDMRKDVGHLFLFMKGTWQYSDNGIDWEPADELLKEVA*
Ga0114999_107240822F096209AGGAGGMSVNIQTKSIDEIYEDMIDQYTKGEYLDGCTSYGEDALMGPDKFADRFQHICFGFGYREAEIIPMKSEIKEWCQE
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