NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0114923_10115870

Scaffold Ga0114923_10115870


Overview

Basic Information
Taxon OID3300009788 Open in IMG/M
Scaffold IDGa0114923_10115870 Open in IMG/M
Source Dataset NameDeep subsurface microbial communities from Indian Ocean to uncover new lineages of life (NeLLi) - Sumatra_00157 metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1885
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Sediment → Deep Subsurface → Deep Subsurface Microbial Communities From Various Oceans To Uncover New Lineages Of Life (Nelli)

Source Dataset Sampling Location
Location Namenear North Sumatra
CoordinatesLat. (o)1.759Long. (o)96.774Alt. (m)Depth (m)1855
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F099319Metagenome / Metatranscriptome103Y

Sequences

Protein IDFamilyRBSSequence
Ga0114923_101158702F099319AGGAGMTSKTKMNRQSILAMPEFAHIKETLHATAAAGGTSNIWQPIRETPLEVFYAKGDHSFENETPNPNLERIWFDRYNLRMGDTAKSNMRIGGTTLRETVSVPNSLSALKIADEILEGAEPYSDWKQYSRVIDMTTPKVNVPITKYSDTVGGSLTDQKGIIIYKEGGTGTPPAIGGKTETVELDCSGTNNSYRGTLSVERNDVKDNNFLAVEQSLKNAGNEFYFMVGEDLISTQVTAATNTATKASLDSASPSNSELEALIQVIRGEFPGQQRNRADTMFINPSDAALAVKNAGANGEYAFISRFMLGPTDSADVVNNSGLAIALGLRNVWETPQIVEGTVLVTKRDISQVVGLREDLTIENFDLSVGGLYESDLVIRYDKKQAHPEGSFTITAFNV*
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