NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0126307_10010622

Scaffold Ga0126307_10010622


Overview

Basic Information
Taxon OID3300009789 Open in IMG/M
Scaffold IDGa0126307_10010622 Open in IMG/M
Source Dataset NameSerpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot28
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6689
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)10 (83.33%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil → Serpentine Soil Microbial Communities From Uc Mclaughlin Reserve, Ca, Usa

Source Dataset Sampling Location
Location NameUC McLaughlin Reserve (Lake County, CA)
CoordinatesLat. (o)38.8692Long. (o)-122.4283Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000972Metagenome817Y
F012851Metagenome276Y
F014588Metagenome261Y
F023050Metagenome211Y
F095025Metagenome105Y

Sequences

Protein IDFamilyRBSSequence
Ga0126307_1001062211F014588GAGMVQKVTEQNEQERIIMSLFTAEDYEPLPPGLYVGKLSDIESRESTNGEYRCWGWEILEGPYAGQKVYSNTSTNFGPQAKARQWVENILGRELKAGEQIGIEDLVGGKHHLMIENVKRDGRTFDNVSAVHKYRGE*
Ga0126307_100106222F000972N/AMADEDTVLEEARDNLKEAGQRIRATQSLMRSQGMTDGENHRDLLTRLSTALAMTEAAYLEARRRRDL*
Ga0126307_100106224F023050GGAGMRSWIRRLERDARGHLESFELLDGSIYYYNRLETSKELFMHAYDVQLGDADKWPEPPEVYRMMCEAKDPAEVLERFTPEDPERAFVDVTQIYDSDALVRERRLVPLTHEPVEDLSEP*
Ga0126307_100106225F095025GGAGMGLSRGKLRRLEDRTQAIAAQTQEDERLERERAVMRMILDEFARLKASGELLDLDPLAQAVRNVVAAQYADLGEESCEYIAEGWIETLREWIRFDWMVKAGRNGAPHA*
Ga0126307_100106226F012851AGGMRNSEWCINHHPEQAELRRRRASKGGKRGGRGRPIAELANLRDENADIRRRLLEGELLPNVAAVAVQSINTDIRALGAAMKAREQEELVERLESLEEALEQRKGERRYGA*
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