Scaffold Ga0126307_10587302

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0126307_10587302

Scaffold Ga0126307_10587302

Overview

Basic Information
Taxon OID	3300009789 Open in IMG/M
Scaffold ID	Ga0126307_10587302 Open in IMG/M
Source Dataset Name	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot28
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	899
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (75.00%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (100.00%)
Associated Families	3

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → unclassified Rubrobacteraceae → Rubrobacteraceae bacterium	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil → Serpentine Soil Microbial Communities From Uc Mclaughlin Reserve, Ca, Usa

Source Dataset Sampling Location
Location Name	UC McLaughlin Reserve (Lake County, CA)
Coordinates	Lat. (^o)	38.8692	Long. (^o)	-122.4283	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F004425	Metagenome	438	Y
F005142	Metagenome	410	Y
F007136	Metagenome	357	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0126307_105873021	F005142	GGA	MTPPTVDGQTSLPKRSGPKGMLPSTWLARTLKVSYMDCYGSGQETCGTLLDYFPAGPVLHIDGVKTLISWDRLVAVQLVEA*
Ga0126307_105873022	F007136	GGAGG	MEGGIITHTPDYFGLLVASSVFALGSAVVTAICVRYGARGLAWLWAAAFFGSALVSAYCLGKLL*
Ga0126307_105873023	F004425	AGGAGG	VNAWQLLPAIRDLYSRQPEYFHHEPWELVHVLYSLGYVDGLADESEIAAAVEVARGDWPQWRAA*

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