NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0115012_10040400

Scaffold Ga0115012_10040400


Overview

Basic Information
Taxon OID3300009790 Open in IMG/M
Scaffold IDGa0115012_10040400 Open in IMG/M
Source Dataset NameMarine eukaryotic phytoplankton communities from Atlantic Ocean - Tropical Atlantic ANT10 Metagenome
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3069
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (60.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium TMED36(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Eukaryotic Phytoplankton Communities From The Norwegian Sea, Arctic And Atlantic Ocean

Source Dataset Sampling Location
Location NameTropical Atlantic Ocean
CoordinatesLat. (o)2.405Long. (o)-13.602Alt. (m)Depth (m)80
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004629Metagenome430Y
F005038Metagenome / Metatranscriptome414Y
F050002Metagenome146Y
F053631Metagenome141Y

Sequences

Protein IDFamilyRBSSequence
Ga0115012_100404003F004629AGGAMTIPAKLTVNELDNMFQTATYVERYLPNPHIKNQKTDMFNLIDRLYGIGKDKDSYKGEDKPKIKIRLNGEQLQIYEFCLLLLIKANEKDRDIIQLRNFPNRRSFRQLQRFFLPNSHEKVRNDYYLALYQLIKLYHLKGKKYFLK*
Ga0115012_100404007F050002AGGAGGMSDYFVKNIHQDLNNFDMYLQEHFERVSYDDDADVNSCITDMKYVSKRLQKLDRIEKILETKEG*
Ga0115012_100404008F005038AGGAGGMKAKDLNIYNLFSATYKKRKMFSFIGFSELSLMPKIDKPIRQISNVYQFPILRTYNQKRRIK*
Ga0115012_100404009F053631GGAGGMIKSIYFALCFGLALFGLLILTHISIPIGLSMFFLFIVKFLLMLPKYEEE*
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