NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0115012_10098188

Scaffold Ga0115012_10098188


Overview

Basic Information
Taxon OID3300009790 Open in IMG/M
Scaffold IDGa0115012_10098188 Open in IMG/M
Source Dataset NameMarine eukaryotic phytoplankton communities from Atlantic Ocean - Tropical Atlantic ANT10 Metagenome
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2045
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (100.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Eukaryotic Phytoplankton Communities From The Norwegian Sea, Arctic And Atlantic Ocean

Source Dataset Sampling Location
Location NameTropical Atlantic Ocean
CoordinatesLat. (o)2.405Long. (o)-13.602Alt. (m)Depth (m)80
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002137Metagenome / Metatranscriptome590Y
F007756Metagenome / Metatranscriptome345Y
F054943Metagenome / Metatranscriptome139Y
F094001Metagenome / Metatranscriptome106Y

Sequences

Protein IDFamilyRBSSequence
Ga0115012_100981882F007756GGAGGMKQLNTLKRYYVNVKFEKYGTYTIEATSKENALEIYNDGNYGWSDYTEDFGEFNEVVEDVEEEVFADTQLTLSGVL*
Ga0115012_100981883F054943AGGAGMRHLIPLTPKQIQIVQASLQLSLKYADSQYIDNVNEIMNEIEDNTRLGGNL*
Ga0115012_100981884F094001GGAGGMNELRLPPDTPIQYEEGLWELCTDRAYEMMKHKRQFLNDDIFNYQIEYWTTKIFEANSHLRGED*
Ga0115012_100981888F002137AGGAGMRVTNHINKSKMKVSELIEALSYYDGDDNITFYFLKNDTLTNCQVEDIAFYSDTMGVEFTIQDTSEIMEEV*
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