NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0115012_10137089

Scaffold Ga0115012_10137089


Overview

Basic Information
Taxon OID3300009790 Open in IMG/M
Scaffold IDGa0115012_10137089 Open in IMG/M
Source Dataset NameMarine eukaryotic phytoplankton communities from Atlantic Ocean - Tropical Atlantic ANT10 Metagenome
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1751
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → environmental samples → uncultured marine virus(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Eukaryotic Phytoplankton Communities From The Norwegian Sea, Arctic And Atlantic Ocean

Source Dataset Sampling Location
Location NameTropical Atlantic Ocean
CoordinatesLat. (o)2.405Long. (o)-13.602Alt. (m)Depth (m)80
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003679Metagenome / Metatranscriptome474Y
F054358Metagenome / Metatranscriptome140N

Sequences

Protein IDFamilyRBSSequence
Ga0115012_101370891F054358N/AMGITRKEKMSSSKTPIRQDEKDYLDHFIETKYDDRKNILKTEMQDTIDKEAEDNFEAFKDKLKINKMHDEVRVLYEDHKKFANEMDSILLEKKGKLDNAINVLEDKLDQWSKVRKWKNELSRSLLKEP
Ga0115012_101370895F003679N/AYRVIIKGKFKEKPINLARAVSLMFRQRFSGSIQQEHIRWWKPYWIKPINLEILYPKSGWITLVKIFREGKPSVRVITRPISSDKRELLVLKNNYGKEE*
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