Scaffold Ga0115012_10331874

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0115012_10331874

Scaffold Ga0115012_10331874

Overview

Basic Information
Taxon OID	3300009790 Open in IMG/M
Scaffold ID	Ga0115012_10331874 Open in IMG/M
Source Dataset Name	Marine eukaryotic phytoplankton communities from Atlantic Ocean - Tropical Atlantic ANT10 Metagenome
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1152
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (33.33%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Eukaryotic Phytoplankton Communities From The Norwegian Sea, Arctic And Atlantic Ocean

Source Dataset Sampling Location
Location Name	Tropical Atlantic Ocean
Coordinates	Lat. (^o)	2.405	Long. (^o)	-13.602	Alt. (m)		Depth (m)	80
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F046315	Metagenome	151	Y
F059875	Metagenome	133	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0115012_103318741	F046315	N/A	MNKKFMEYSVKSSYNSEFVESYMKKNDLLPKEFRFRRSALDLLLKQSNKKITDFVKDTYKPSEQKNKLAQISKILNPKPNAPKYFTENDLANDLAHWINNFLNLDETVAPNFFVGNMVQVDCIGTLFGNGQIGMHKKNERHKINIHPKYASFQAIECLVESKRGLMMLFKPTKTIDRNANNRTVICQDKRTKVIWFGFLEPNSNGKFDVVDKSQSTGKTIG
Ga0115012_103318742	F059875	N/A	MKILVLIFGVITNDGKIELIKVPNSEFKNLNTCEKALETLTKWQLNPKSKPGNYEVWGFYTYKNRPIMLQYCTESGVEHE*

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