NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0105189_1022319

Scaffold Ga0105189_1022319


Overview

Basic Information
Taxon OID3300009794 Open in IMG/M
Scaffold IDGa0105189_1022319 Open in IMG/M
Source Dataset NameMarine viral communities from the Southern Atlantic ocean transect to study dissolved organic matter and carbon cycling - metaG 3438_5245
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)604
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine Oceanic → Marine Microbial Communities From The Southern Atlantic Ocean Transect To Study Dissolved Organic Matter And Carbon Cycling

Source Dataset Sampling Location
Location NameSouthern Atlantic ocean
CoordinatesLat. (o)-9.4986Long. (o)-25.9999Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F060347Metagenome133Y

Sequences

Protein IDFamilyRBSSequence
Ga0105189_10223191F060347N/AKRKVYAPFSQTSEAGVAQTPVEGYIGVNQTIYPSVDTGVIDENGIWRGVKSSDTEFFAITKFDSIPDGGETLSPDTGTVNFIDMTGFTDIQLAIKPTNTGNYKIEAVMGPDTNRYANLDPVNSGNRLRGIPANQPDMEDWVVDSAEALADTWNIFYIERRLQNQKLLQFKITNNSGGASTIEVAFMRMV*
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