NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0105057_1068307

Scaffold Ga0105057_1068307


Overview

Basic Information
Taxon OID3300009813 Open in IMG/M
Scaffold IDGa0105057_1068307 Open in IMG/M
Source Dataset NameGroundwater microbial communities from the Columbia River, Washington, USA - GW-RW N3_10_20
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)613
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Sand → Unclassified → Groundwater Sand → Groundwater Microbial Communities From The Columbia River, Washington, Usa

Source Dataset Sampling Location
Location NameUSA: Columbia River, Washington
CoordinatesLat. (o)46.372Long. (o)-119.272Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005980Metagenome / Metatranscriptome384Y

Sequences

Protein IDFamilyRBSSequence
Ga0105057_10683072F005980AGAAGGMLDGEPWKSRVVEAVDPEEFEFAPYRDVFEAVADDAVLSLDETSARAYELLKAEGLADRDPNELYERAVNWIEARRLERTLEQLDRRLPFESPEGQVSLIAEKRRVFDELRKRYPRYKIAARRRGAPGT*

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