Scaffold Ga0105070_1000558

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0105070_1000558

Scaffold Ga0105070_1000558

Overview

Basic Information
Taxon OID	3300009815 Open in IMG/M
Scaffold ID	Ga0105070_1000558 Open in IMG/M
Source Dataset Name	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW S1_0_10
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	4538
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (50.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Sand → Unclassified → Groundwater Sand → Groundwater Microbial Communities From The Columbia River, Washington, Usa

Source Dataset Sampling Location
Location Name	USA: Columbia River, Washington
Coordinates	Lat. (^o)	46.372	Long. (^o)	-119.272	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F025527	Metagenome / Metatranscriptome	201	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0105070_10005583	F025527	GAG	MELKAVEVRTHGDNYVVQAWNKGTSTSMDLEKHCGPEDLKKLEIDGRAKRKAFSGPPNLLSLSQVLRLAGNYVDRMQGRLIRVSWQDQSDKIQSVTIQYEPCPVDRKVHGEAQTTVIEEVCVHIYKQRKKMATAQDKNSHRPFVSVNNPS*

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