NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0105070_1038770

Scaffold Ga0105070_1038770


Overview

Basic Information
Taxon OID3300009815 Open in IMG/M
Scaffold IDGa0105070_1038770 Open in IMG/M
Source Dataset NameGroundwater microbial communities from the Columbia River, Washington, USA - GW-RW S1_0_10
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)866
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Sand → Unclassified → Groundwater Sand → Groundwater Microbial Communities From The Columbia River, Washington, Usa

Source Dataset Sampling Location
Location NameUSA: Columbia River, Washington
CoordinatesLat. (o)46.372Long. (o)-119.272Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F064864Metagenome / Metatranscriptome128N

Sequences

Protein IDFamilyRBSSequence
Ga0105070_10387701F064864N/AAKVEMGPFGLVFVAAAVIAGLATLLPYERFFRQGWGMVALYVWSVVNLTLIAVGVWATGGSSSPLMFQYALTTVLFAVAFSPPAQVILLGLTVASYSVAVGASKWDPMLLGVLAVLALLANILVGQLKRQTAAHREARRESERRWALLAVVSAAARQMSAVEPMAVLRAVVDSVVALGYPTARIFVQESADHQGAVPLETPGAFPEGIESLRFEDIDGVLVGGQPVVVGLADDGALGGPLRRLGLSSAVVIPIFAADREEAILVVGIEEPPGPSSQDLEVFQMLATQA
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