NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0105076_1002389

Scaffold Ga0105076_1002389


Overview

Basic Information
Taxon OID3300009816 Open in IMG/M
Scaffold IDGa0105076_1002389 Open in IMG/M
Source Dataset NameGroundwater microbial communities from the Columbia River, Washington, USA - GW-RW N1_0_10
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2765
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Sand → Unclassified → Groundwater Sand → Groundwater Microbial Communities From The Columbia River, Washington, Usa

Source Dataset Sampling Location
Location NameUSA: Columbia River, Washington
CoordinatesLat. (o)46.372Long. (o)-119.272Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F083755Metagenome / Metatranscriptome112Y

Sequences

Protein IDFamilyRBSSequence
Ga0105076_10023893F083755GGTGGVWFDALSGGTGDSPTYVPQFEAFCQHAQLATLLPLDEVIVIGDRKMPTVDNQRAWLRLGVSYIGPTTMQEAHRQALRTVLEAGQRWSILPYIAQRERAKDQDDRTVYRGIGHSVELTDEALGVRSPVRHLSSHSRALAQHEAQRRQAEMSTIEAAIQRIQGLVNKYDYKSPEIIIRRVQEKAFKQRAAKHYFDIRVVEHAERPEAPYSFVYTIDHDHVASDAALDGVYVLVAGGPAVHWDDASLFQEWKGQ*
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