NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0105078_1019817

Scaffold Ga0105078_1019817


Overview

Basic Information
Taxon OID3300009823 Open in IMG/M
Scaffold IDGa0105078_1019817 Open in IMG/M
Source Dataset NameGroundwater microbial communities from the Columbia River, Washington, USA - GW-RW N1_40_50
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)772
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → unclassified Planctomycetota → Planctomycetota bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Sand → Unclassified → Groundwater Sand → Groundwater Microbial Communities From The Columbia River, Washington, Usa

Source Dataset Sampling Location
Location NameUSA: Columbia River, Washington
CoordinatesLat. (o)46.372Long. (o)-119.272Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006941Metagenome / Metatranscriptome361Y
F082658Metagenome / Metatranscriptome113Y

Sequences

Protein IDFamilyRBSSequence
Ga0105078_10198171F006941N/ALKHQAHALHQTLQKVMRGFGRQCRGQGKVFVTLVRQTERQLLDLGSSIENWAQDAKELLHQETHLREVQRERLRRDLEAASDAHRHIAKQSQRLTQGKKLAQCKIVNAYDPTIAPIMKGKSNCPAQFGRKTGLLSEPASGFIFANRVPHGNPSDPSYVLPMLDKVQQAIDLVASPQHLRVHSLGGDLGVNDAELRHA
Ga0105078_10198172F082658N/AQAAAAMVEGLVSPAHLLVDTFPAEQGSQRVTDATTLYKAQKKPATQRANHPGSLLAPRPY
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Institute for Fundamental Biomedical Research
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