Scaffold Ga0130087_1022406

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0130087_1022406

Scaffold Ga0130087_1022406

Overview

Basic Information
Taxon OID	3300009828 Open in IMG/M
Scaffold ID	Ga0130087_1022406 Open in IMG/M
Source Dataset Name	Sorghum rhizosphere soil microbial communities in Albany, CA(condition:control)- sample E
Source Dataset Category	Metatranscriptome
Source Dataset Use Policy	Open
Sequencing Center	QB3 Vincent J. Coates Genomics Sequencing Laboratory
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	946
Total Scaffold Genes	1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Eukaryota → Amoebozoa → Tubulinea → Elardia → Arcellinida → Sphaerothecina → Arcellidae → Arcella → Arcella intermedia	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated → Sorghum Rhizosphere Soil Microbial Communities From California, Usa

Source Dataset Sampling Location
Location Name	California,USA
Coordinates	Lat. (^o)	37.887207	Long. (^o)	-122.304401	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F011816	Metagenome / Metatranscriptome	286	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0130087_10224061	F011816	N/A	VEKSKEKNELEQLIETGNQLIENIKNDEYVKELRMRAGIVRSNLTYVDNEGRTKIDVDMLVKLQAALMPALADTFQKIHIPRIEHSDPRLDFWVDNIVLCGYDIFPDNIKFHIERETELSIRDIESRGSYTRLVIHLDKLRTEIRNIEFYFKKKTMPSLSDSGLVTFRIPENGAHLSIYFTIEERPGETHPRLTEGYADFSIRKMDIEFDKSTLKHDVLLPMMIGLAKPAIHSKIEKAVETNLSNALKQLGDRLTLALGEINRPTFFGGKFGSVRETIKASDPAQVYHKRRVKLE*

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