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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300009828 Open in IMG/M |
| Scaffold ID | Ga0130087_1056232 Open in IMG/M |
| Source Dataset Name | Sorghum rhizosphere soil microbial communities in Albany, CA(condition:control)- sample E |
| Source Dataset Category | Metatranscriptome |
| Source Dataset Use Policy | Open |
| Sequencing Center | QB3 Vincent J. Coates Genomics Sequencing Laboratory |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 599 |
| Total Scaffold Genes | 1 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
| Novel Protein Genes | 1 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
| Associated Families | 1 |
| Taxonomy | |
|---|---|
| Not Available | (Source: ) |
| Source Dataset Ecosystem |
|---|
| Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated → Sorghum Rhizosphere Soil Microbial Communities From California, Usa |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | California,USA | |||||||
| Coordinates | Lat. (o) | 37.887207 | Long. (o) | -122.304401 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F032410 | Metagenome / Metatranscriptome | 180 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0130087_10562321 | F032410 | N/A | HAAKPHATTVCNNSTMPCTNISNLLLNQGNGPDFVQNATSLGSVGGTDQGRKVNLRQASDSRINEDFVIRFVGTVGQLCERPGVNALDPTSYACLVYDFSGGSFYPVYQGQFAPDSNESGFCVGALSATLGFKVRLERCGSPKSFWVADLAASITITVPAPFQPLVYFPLEFAADTSASNPLVMTLNPNSTRPSNALTL |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |