NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0105068_1004720

Scaffold Ga0105068_1004720


Overview

Basic Information
Taxon OID3300009836 Open in IMG/M
Scaffold IDGa0105068_1004720 Open in IMG/M
Source Dataset NameGroundwater microbial communities from the Columbia River, Washington, USA - GW-RW N1_10_20
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2090
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Archaea(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Sand → Unclassified → Groundwater Sand → Groundwater Microbial Communities From The Columbia River, Washington, Usa

Source Dataset Sampling Location
Location NameUSA: Columbia River, Washington
CoordinatesLat. (o)46.372Long. (o)-119.272Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F056478Metagenome / Metatranscriptome137N
F104901Metagenome100N

Sequences

Protein IDFamilyRBSSequence
Ga0105068_10047201F056478N/AMPCALLGDRASGKTTFLGLLYAAQVKYGTGVTDDFRFHAPIQSLNVMSAVYEGMKDGRFPSATLKEEITELGFIFGYLRKVVGK
Ga0105068_10047202F104901N/AVIVGDRISGKTTFLGLLYAAQVKFGSDKADGFRFHAAFESLDEISGVFQRLMSGSFPDAATKEGVREIAFRLSYRRTGLGILSRRRLRGSSPDASAPFQLILLKSFEADMARSRDEGSVAHGTLSSALTSDAIVIMVDATSLAVADEEGELAPLGKYDEAVEALLMAIKRSRDQAEGKLLYPIFVFSKFDRVDPEVLRRANLNAAPPDVSKKGPHAEYAKRLVDRSMPKTVAIIQSGGRRGLRFATPSYFFSWVRTDEPVPGRDQRIRLRRSGAIGWEPDYPSDEYLAFLECLGRIAADTTA*
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