NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0126313_10024467

Scaffold Ga0126313_10024467


Overview

Basic Information
Taxon OID3300009840 Open in IMG/M
Scaffold IDGa0126313_10024467 Open in IMG/M
Source Dataset NameSerpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot105A
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4063
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (60.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → unclassified Rubrobacteraceae → Rubrobacteraceae bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil → Serpentine Soil Microbial Communities From Uc Mclaughlin Reserve, Ca, Usa

Source Dataset Sampling Location
Location NameUC McLaughlin Reserve (Lake County, CA)
CoordinatesLat. (o)38.8722Long. (o)-122.4269Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000756Metagenome / Metatranscriptome905Y
F002196Metagenome / Metatranscriptome584Y
F003251Metagenome / Metatranscriptome497Y
F050186Metagenome145Y

Sequences

Protein IDFamilyRBSSequence
Ga0126313_100244673F050186N/ALNEHQAHDHEGAPVKPGDQKARYAGLGVGSNLYRAAMWWLLDVGALVPVEEANEQLRNAVGAQHRSFAFKITRHGLNMLRGV*
Ga0126313_100244676F000756AGGAGGMMDRERPSAREGRIPEAWIGQEVMLETTEALSSDLRAAAPVYLEDVNDRGVVMLVTRHHDQSQFSRYFYPWSVVGWIRLAEEDERSKPRSKGS*
Ga0126313_100244677F003251AGGAVQTKTYTTETAAKKAAVRAYSPAIVRLANGRYVWSHGGHRLPQGAHTVSRWGMNQWRAYE
Ga0126313_100244678F002196AGGAGMYRTTEDARALLRAAQEIHAERHGTQTFGLGTHLPLEAAGQRTGIRPNSIRYHDAIEELEYEGAIEWPTSARYARGDKHYGITQRGLDGAE*
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