NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0131092_10015833

Scaffold Ga0131092_10015833


Overview

Basic Information
Taxon OID3300009870 Open in IMG/M
Scaffold IDGa0131092_10015833 Open in IMG/M
Source Dataset NameActivated sludge microbial diversity in wastewater treatment plant from Taiwan - Linkou plant
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterBeijing Novogene Bioinformatics Technology Co., Ltd
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)12446
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (58.33%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Engineered → Wastewater → Activated Sludge → Unclassified → Unclassified → Activated Sludge → Activated Sludge Microbial Community Analysis In Wastewater Treatment Plant From Tai Wan

Source Dataset Sampling Location
Location NameTai Wan
CoordinatesLat. (o)25.0Long. (o)121.0Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F059227Metagenome / Metatranscriptome134N

Sequences

Protein IDFamilyRBSSequence
Ga0131092_100158331F059227AGGAGMSSAWVTAAAIWGAALSTVLAWSRFLPRPKVILAPWPAERPQPSQLEMRVVNSSSWPIEIYRVRRIRLSGKPVEFAPNTDPEMPLSNWFDWDESGELFLFVPPHSRGSLFMRGLDRNSRSLLIFYWHCGPILPVRNPLYVYVSGRHAERVSRSSQRQRRLAVKG*
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