NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0130079_13852301

Scaffold Ga0130079_13852301


Overview

Basic Information
Taxon OID3300009872 Open in IMG/M
Scaffold IDGa0130079_13852301 Open in IMG/M
Source Dataset NameCow rumen microbiome (microbial/fungal) from cows held on UI at Urbana campus farm, Champaign, IL - Switchgrass. Combined Assembly of Gp0148675, Gp0148676
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterU.S. Department of Energy (DOE)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)904
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Mammals → Digestive System → Foregut → Rumen → Rumen → Cow Rumen Metatranscriptome

Source Dataset Sampling Location
Location NameUniversity of Illinois at Urbana - Champaign, Illinois, USA
CoordinatesLat. (o)40.096Long. (o)-88.2315Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F094714Metagenome / Metatranscriptome105N

Sequences

Protein IDFamilyRBSSequence
Ga0130079_138523011F094714N/ASLCSKSAQTTTSTAIETEREVSLLGYKNNSDKAYELQEGKYNFFRKINYADYLYSLVHFSNDNATLEDNYENINVNYSLTDPFYAESFNNDTFQSFLENKILKHKAVYDDASNNETATSIFKECFMAANTGLDLKLYQDANTRGESSASKSNMVKKSDCIGYGILYCSGANYIKIKSIFNIFQVDGQLKKSDNFSRFLLSTFLIASYCMVNARNKLNNYEEIGQITKDQLTDLINTSELKDCQNLVEVTNKLIFGEDTSQGLNYAEFKAKFENSDKDTSLNFLLSPTGVRYMLIKHNV*
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