NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0133737_10001

Scaffold Ga0133737_10001


Overview

Basic Information
Taxon OID3300009953 Open in IMG/M
Scaffold IDGa0133737_10001 Open in IMG/M
Source Dataset NameHuman saliva viral communities from oral cavities of healthy adults from Alicante,Spain - individual 3
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterAutonomous University of Barcelona
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)103319
Total Scaffold Genes123 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)104 (84.55%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Human → Digestive System → Oral Cavity → Saliva → Human Oral Cavity → Human Saliva Viral Communities From Oral Cavities Of Healthy Adults From Alicante,Spain

Source Dataset Sampling Location
Location NameAlicante,Spain
CoordinatesLat. (o)38.3852246Long. (o)-0.5132249Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F018385Metagenome235Y
F027205Metagenome195N
F071329Metagenome122N
F081456Metagenome114N

Sequences

Protein IDFamilyRBSSequence
Ga0133737_10001107F018385GGAMMAELINSWLPYQELSIEKDRDPVTDDEIIYGNHVKHFTLTVYSPEGRVNKYWNARILKDQAGYCRVACPREKKILCFNWVRWTAYMFSHDGMNELVFMPDARRRTVSQLSFDHVPMKEVN*
Ga0133737_10001108F071329AGGMRPLYSKGILMLPVAKIIISGLSSIGAGMIASKLTKPIVSNSSGIAKILLWFGSVGTGIAASAIVAREVELQFDATIKAVEEARDHIEIED*
Ga0133737_10001114F027205N/AMRAVKESEEFERKALVEARKRDRAEGKPPREVLHPDHKPGREIVLDYIKNPERRRTPRCSVRLEKRTANNSYRFVVDVSQVRNRELADEIEKDLFAFMDYLLDEYDIPRRIRK*
Ga0133737_1000196F081456N/ALGYRLFLEKGAHMFEEPPIYYILISLIFLIVFGAVAFATWLVWLTPISFMAKLVMTAIGFLLCAITVILYTISAE*
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.