Scaffold Ga0105135_119525

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0105135_119525

Scaffold Ga0105135_119525

Overview

Basic Information
Taxon OID	3300009980 Open in IMG/M
Scaffold ID	Ga0105135_119525 Open in IMG/M
Source Dataset Name	Switchgrass associated microbial communities from Austin, Texas, USA, to study host-microbe interactions - LS_219 metaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	590
Total Scaffold Genes	1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Unclassified → Unclassified → Unclassified → Switchgrass Associated → Switchgrass Associated Microbial Communities From Austin, Texas, Usa, To Study Host-Microbe Interactions

Source Dataset Sampling Location
Location Name	Austin, Texas
Coordinates	Lat. (^o)	30.387	Long. (^o)	-97.7301	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F018870	Metagenome	232	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0105135_1195251	F018870	N/A	VCTPKPVLTTGTSRQRNRAKPPRNLVLGLKKWIGQDRREKTRRNFGSTKCCILCTPKPDLTTCNSLQRNRTKPPRNLVLGPKKWIGHVHCKKTRLNFGSTKWCILCIPKPDLTTCTSRQGNRGNHPET*

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