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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300010020 Open in IMG/M |
| Scaffold ID | Ga0133900_1000567 Open in IMG/M |
| Source Dataset Name | Microbial communities of stony corals with Black-band disease (BBD) from Carrie Bow Cay Field Station, Belize; BBD Transitions coral #2 sample T2 |
| Source Dataset Category | Metatranscriptome |
| Source Dataset Use Policy | Open |
| Sequencing Center | University of Maryland |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 2503 |
| Total Scaffold Genes | 7 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 2 (28.57%) |
| Novel Protein Genes | 4 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
| Associated Families | 4 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Cnidaria → Anthozoa → Hexacorallia → Scleractinia → Faviina → Merulinidae → Orbicella → Orbicella faveolata | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated → Black Band Disease Transitions |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Belize: Carrie Bow Cay Field Station | |||||||
| Coordinates | Lat. (o) | 16.80288 | Long. (o) | -88.08213 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F001105 | Metagenome / Metatranscriptome | 776 | Y |
| F003767 | Metagenome / Metatranscriptome | 469 | Y |
| F025647 | Metagenome / Metatranscriptome | 200 | Y |
| F100364 | Metagenome / Metatranscriptome | 102 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0133900_10005671 | F003767 | N/A | LEKRLQYSTMVSITIMVGGAVLNATAFIGGNYLARALGGGDKAALEEKKRHGKALKDCQAAYAKYTRDRTQLLDWIATNAQTKAEAQQNFTNTDYAFKLYNQAHPDEHMVPPEEPKFSDFYQLSEHQKKGQLVFVGVGALALGYAAFRFL* |
| Ga0133900_10005672 | F001105 | N/A | MSDNKLVKTVLEAATLTGLAAGIGWAAKKAVNENFTSDPSNSLMNYVKFTAIMVGSIALKKYLEDQKIIPTSI* |
| Ga0133900_10005676 | F025647 | N/A | MAEEEAALAEVMNLLQTEPEPSSGPAGGGLVPTAGPDIPALREQLAVLVSTGKAKEAIEVQLTHEQVKHLSNKDVEKFTKCYETYVGSKTTESLMDSFIFLITKVVGMVVNIKDIDAYQKELRNDYIINKELSNLAGNLALKCRQFLAAANAALITTNILILVHSCQSRAPFLVMNTDIRLRALMKYPAQQLQNDWSPIINNC* |
| Ga0133900_10005677 | F100364 | N/A | HMGISIWVLTQKLTGITSSFRENVAVIILFYTPSAKMTKAIFEDYAGELSLDEYKGLVSKLKERKFSYLVFMLCHPYGVKLFE* |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |