Basic Information | |
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Taxon OID | 3300010023 Open in IMG/M |
Scaffold ID | Ga0130028_100090 Open in IMG/M |
Source Dataset Name | Terrestrial hot spring microbial mat viral communities from Octopus Spring, Yellowstone National Park, Wyoming (2009) spADES assembly |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | Duke University |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 4374 |
Total Scaffold Genes | 12 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 8 (66.67%) |
Novel Protein Genes | 8 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 6 (75.00%) |
Associated Families | 8 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Alkaline → Terrestrial Hot Spring Microbial Mat → Terrestrial Hot Spring Microbial Mat Viral Communities From Octopus Spring, Yellowstone National Park, Wyoming |
Source Dataset Sampling Location | ||||||||
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Location Name | Yellowstone National Park, Wyoming | |||||||
Coordinates | Lat. (o) | 44.53408 | Long. (o) | -110.7979 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F000642 | Metagenome / Metatranscriptome | 965 | Y |
F000855 | Metagenome / Metatranscriptome | 859 | Y |
F001381 | Metagenome / Metatranscriptome | 709 | Y |
F002229 | Metagenome / Metatranscriptome | 580 | Y |
F002372 | Metagenome / Metatranscriptome | 566 | Y |
F002795 | Metagenome / Metatranscriptome | 529 | Y |
F002978 | Metagenome / Metatranscriptome | 516 | Y |
F004024 | Metagenome / Metatranscriptome | 456 | N |
Protein ID | Family | RBS | Sequence |
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Ga0130028_10009010 | F002795 | AGGA | MRRIRMPVTTGLVLHGLVAAYREFISRKDGKVYRIVTVYGDLVVGEDVLCRVDGYDVFVDSPSYARGEMVTFPARLQFVRDSSGRPAVRLYVYEGVR* |
Ga0130028_10009011 | F002372 | AGGGGG | MPTRKEDSLWLVVHRRSAHLRALLDGLDGVDIGVTYELDYYPYAIVELLRVRDDAPPLVLRSVYISANRQWEYHSEYTLRVVEAALQLVEEYRADPSLGGAEGV* |
Ga0130028_1000902 | F000855 | GAGG | MDWLEDFFSKVVSWFDERAANIYNAVVAFINVLVDVWNGWMDALLHPAQAMPSIPALRWVVDWLGGIVDYTRLMYMLVDYVAYASIVQQALTAQIGIVIVGLGFRAWLVIRRVVLVS* |
Ga0130028_1000903 | F001381 | GAG | MQYVIAALYVLVWLALAAAAALWLPVWALPVALVQLAVAYVMVRSWLTAAAGGDDGA* |
Ga0130028_1000904 | F000642 | N/A | LGARGALARWAVQEISIALAICAVGAAVWYMRRREASGRVHGWLVLYDDLGGWRALPAVYADSGIVADGVTYPASLPVVRVDRTLVWIARCDAAALIEHQALERAREAAALASLWRGGGQWLDLLRVLGVVLPAAFAYFTWAQVAGLQALVAQILALVGDK* |
Ga0130028_1000905 | F002978 | AGG | MSSVRDWRVTVVPWADRRLWFVQARRGRRVVWGIVYDADDPDSVALARRAIATLRAASADCSALPHPLPGIAPPGA* |
Ga0130028_1000907 | F004024 | N/A | MVEVTMHSERDYLRQPSLLNDDDMMFLDARATLAAALSRAVVGYSDPRVRALAWLSIATPRLYDRIAPIIEASAIRQSPGASRTLRDALRALSLEEYVRRRDERRSER* |
Ga0130028_1000909 | F002229 | GGAGG | MMVTLLTFDGVEEVDYVPSDLEIRASLGDSGLYGMVLNGVTWMRLVSGVGWWTVVCNRRVTVTLAAVGWCWVMDGLGNRGYWSPALACVPAEVRALCGGCVQDEDEED* |
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