Scaffold Ga0130028

Basic Information
Taxon OID	3300010023 Open in IMG/M
Scaffold ID	Ga0130028_100090 Open in IMG/M
Source Dataset Name	Terrestrial hot spring microbial mat viral communities from Octopus Spring, Yellowstone National Park, Wyoming (2009) spADES assembly
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Duke University
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Source Dataset Name

Terrestrial hot spring microbial mat viral communities from Octopus Spring, Yellowstone National Park, Wyoming (2009) spADES assembly

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

Duke University

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	4374
Total Scaffold Genes	12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	8 (66.67%)
Novel Protein Genes	8 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	6 (75.00%)
Associated Families	8

Scaffold Components

Scaffold Length (bps)

4374

Total Scaffold Genes

12 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

8 (66.67%)

Novel Protein Genes

8 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

6 (75.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Alkaline → Terrestrial Hot Spring Microbial Mat → Terrestrial Hot Spring Microbial Mat Viral Communities From Octopus Spring, Yellowstone National Park, Wyoming

Source Dataset Ecosystem

Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Alkaline → Terrestrial Hot Spring Microbial Mat → Terrestrial Hot Spring Microbial Mat Viral Communities From Octopus Spring, Yellowstone National Park, Wyoming

Source Dataset Sampling Location
Location Name	Yellowstone National Park, Wyoming
Coordinates	Lat. (^o)	44.53408	Long. (^o)	-110.7979	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Yellowstone National Park, Wyoming

Coordinates

Lat. (^o)

44.53408

Long. (^o)

-110.7979

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F000642	Metagenome / Metatranscriptome	965	Y
F000855	Metagenome / Metatranscriptome	859	Y
F001381	Metagenome / Metatranscriptome	709	Y
F002229	Metagenome / Metatranscriptome	580	Y
F002372	Metagenome / Metatranscriptome	566	Y
F002795	Metagenome / Metatranscriptome	529	Y
F002978	Metagenome / Metatranscriptome	516	Y
F004024	Metagenome / Metatranscriptome	456	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0130028_10009010	F002795	AGGA	MRRIRMPVTTGLVLHGLVAAYREFISRKDGKVYRIVTVYGDLVVGEDVLCRVDGYDVFVDSPSYARGEMVTFPARLQFVRDSSGRPAVRLYVYEGVR*
Ga0130028_10009011	F002372	AGGGGG	MPTRKEDSLWLVVHRRSAHLRALLDGLDGVDIGVTYELDYYPYAIVELLRVRDDAPPLVLRSVYISANRQWEYHSEYTLRVVEAALQLVEEYRADPSLGGAEGV*
Ga0130028_1000902	F000855	GAGG	MDWLEDFFSKVVSWFDERAANIYNAVVAFINVLVDVWNGWMDALLHPAQAMPSIPALRWVVDWLGGIVDYTRLMYMLVDYVAYASIVQQALTAQIGIVIVGLGFRAWLVIRRVVLVS*
Ga0130028_1000903	F001381	GAG	MQYVIAALYVLVWLALAAAAALWLPVWALPVALVQLAVAYVMVRSWLTAAAGGDDGA*
Ga0130028_1000904	F000642	N/A	LGARGALARWAVQEISIALAICAVGAAVWYMRRREASGRVHGWLVLYDDLGGWRALPAVYADSGIVADGVTYPASLPVVRVDRTLVWIARCDAAALIEHQALERAREAAALASLWRGGGQWLDLLRVLGVVLPAAFAYFTWAQVAGLQALVAQILALVGDK*
Ga0130028_1000905	F002978	AGG	MSSVRDWRVTVVPWADRRLWFVQARRGRRVVWGIVYDADDPDSVALARRAIATLRAASADCSALPHPLPGIAPPGA*
Ga0130028_1000907	F004024	N/A	MVEVTMHSERDYLRQPSLLNDDDMMFLDARATLAAALSRAVVGYSDPRVRALAWLSIATPRLYDRIAPIIEASAIRQSPGASRTLRDALRALSLEEYVRRRDERRSER*
Ga0130028_1000909	F002229	GGAGG	MMVTLLTFDGVEEVDYVPSDLEIRASLGDSGLYGMVLNGVTWMRLVSGVGWWTVVCNRRVTVTLAAVGWCWVMDGLGNRGYWSPALACVPAEVRALCGGCVQDEDEED*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0130028_100090

Overview

Ecosystem & Geography

Associated Families

Sequences