Basic Information | |
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Taxon OID | 3300010023 Open in IMG/M |
Scaffold ID | Ga0130028_101917 Open in IMG/M |
Source Dataset Name | Terrestrial hot spring microbial mat viral communities from Octopus Spring, Yellowstone National Park, Wyoming (2009) spADES assembly |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | Duke University |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 1034 |
Total Scaffold Genes | 2 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 1 (50.00%) |
Novel Protein Genes | 1 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
Associated Families | 1 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Alkaline → Terrestrial Hot Spring Microbial Mat → Terrestrial Hot Spring Microbial Mat Viral Communities From Octopus Spring, Yellowstone National Park, Wyoming |
Source Dataset Sampling Location | ||||||||
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Location Name | Yellowstone National Park, Wyoming | |||||||
Coordinates | Lat. (o) | 44.53408 | Long. (o) | -110.7979 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F015735 | Metagenome / Metatranscriptome | 252 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0130028_1019172 | F015735 | N/A | MVVYHHWSVEWHPRDVDPPGGLLRVVCIARRAVSDPFAGPGPFPADVDRALRFWNLVASGGARDHGAGYEVVWRVLVVADDADGDAPDGAWSDDPTYRVRRRLLRWIMRSQCPIPALADHFAAEHFRDHPEYFGLLPDSGA* |
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