Scaffold Ga0126338_10014426

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0126338_10014426

Scaffold Ga0126338_10014426

Overview

Basic Information
Taxon OID	3300010030 Open in IMG/M
Scaffold ID	Ga0126338_10014426 Open in IMG/M
Source Dataset Name	Coral microbial communities from Petempiche,Puerto Morelos, Mexico - Orbicella C C metagenome
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	5477
Total Scaffold Genes	9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (22.22%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Cnidaria → Anthozoa → Hexacorallia → Actiniaria → Edwardsiidae → Nematostella → Nematostella vectensis	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Invertebrates → Cnidaria → Coral → Unclassified → Coral → Coral Microbial Communities From Various Locations To Study Host-Microbial Communication

Source Dataset Sampling Location
Location Name	Petempiche,Puerto Morelos, Mexico
Coordinates	Lat. (^o)	20.9047	Long. (^o)	-86.8366	Alt. (m)		Depth (m)	8
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F001105	Metagenome / Metatranscriptome	776	Y
F003767	Metagenome / Metatranscriptome	469	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0126338_100144262	F001105	N/A	MSDNKLVKTVIDAATLTLLAASIGWAAKKVVKENFTSDPSSSVINYAKFTAVMAGSIALKKYLKDQKILPNSI*
Ga0126338_100144264	F003767	N/A	MASIAIMTGGAVLNATAFIAGNYLTRALGGGDKAALAEKKRHDKALEDYQAAYAKYTRDRTQLLDWIAANAQTKEQAKQNFTNTDYAFKLYNQAHPDEQMVPPKEPKFSDFRFLRFQRSEQQKKGELAFVGAGVLALGYAAFRFL*

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