Scaffold Ga0126337_10002607

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0126337_10002607

Scaffold Ga0126337_10002607

Overview

Basic Information
Taxon OID	3300010031 Open in IMG/M
Scaffold ID	Ga0126337_10002607 Open in IMG/M
Source Dataset Name	Coral microbial communities from La Bocana,Puerto Morelos, Mexico - Diploria C A metagenome
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	11540
Total Scaffold Genes	12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	5 (41.67%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Cnidaria → Anthozoa → Hexacorallia → Actiniaria → Edwardsiidae → Nematostella → Nematostella vectensis	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Invertebrates → Cnidaria → Coral → Unclassified → Coral → Coral Microbial Communities From Various Locations To Study Host-Microbial Communication

Source Dataset Sampling Location
Location Name	La Bocana,Puerto Morelos, Mexico
Coordinates	Lat. (^o)	20.8777	Long. (^o)	-86.843	Alt. (m)		Depth (m)	4
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F017437	Metagenome / Metatranscriptome	240	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0126337_100026076	F017437	AGGAG	VSEHKFTSTRLVGQSPGQSILPSLGHKLLFVFPLTNAQLDLTKRKMLSNGSANVKHSEAMSDEIITAMSTACGASIFLFELF*

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