NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0126337_10342458

Scaffold Ga0126337_10342458


Overview

Basic Information
Taxon OID3300010031 Open in IMG/M
Scaffold IDGa0126337_10342458 Open in IMG/M
Source Dataset NameCoral microbial communities from La Bocana,Puerto Morelos, Mexico - Diploria C A metagenome
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)901
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Eukaryota(Source: Euk_MAG)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Invertebrates → Cnidaria → Coral → Unclassified → Coral → Coral Microbial Communities From Various Locations To Study Host-Microbial Communication

Source Dataset Sampling Location
Location NameLa Bocana,Puerto Morelos, Mexico
CoordinatesLat. (o)20.8777Long. (o)-86.843Alt. (m)Depth (m)4
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F032532Metagenome / Metatranscriptome179Y
F051692Metagenome / Metatranscriptome143Y

Sequences

Protein IDFamilyRBSSequence
Ga0126337_103424581F051692N/ANVLIVIHKLLDCNELIVIHKLLDCNELIVIHKLLECNELIVTHKLLDCNELIVTLKLLDCNKLIVIHKLLDCNELIVTQKLLDCNELIVIS*
Ga0126337_103424582F032532GGALIVTHKLLDCNELIVTQKLLDCNELIVIHKLLDCNELIVTHKLLDCNELIVIQKLLDCNELIVTQKLLDCNDLIVTHKLLDCNELIVIHKLLECNELIVIHKLLDCNELIVTQKLLDCNELIVIHKLLECNELIVIQKLLDCNELIVTQKLLDCNELIVTHKLLDCNELIVTQKLLDCNELIVTH
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