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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300010033 Open in IMG/M |
| Scaffold ID | Ga0126339_10003422 Open in IMG/M |
| Source Dataset Name | Coral microbial communities from Petempiche,Puerto Morelos, Mexico - Orbicella T R C metagenome |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 11551 |
| Total Scaffold Genes | 16 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 5 (31.25%) |
| Novel Protein Genes | 3 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
| Associated Families | 3 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Cnidaria → Anthozoa → Hexacorallia → Scleractinia → Faviina → Merulinidae → Orbicella → Orbicella faveolata | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Host-Associated → Invertebrates → Cnidaria → Coral → Unclassified → Coral → Coral Microbial Communities From Various Locations To Study Host-Microbial Communication |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Petempiche,Puerto Morelos, Mexico | |||||||
| Coordinates | Lat. (o) | 20.9047 | Long. (o) | -86.8366 | Alt. (m) | Depth (m) | 8 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F025647 | Metagenome / Metatranscriptome | 200 | Y |
| F053793 | Metagenome / Metatranscriptome | 140 | Y |
| F085124 | Metagenome / Metatranscriptome | 111 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0126339_100034221 | F025647 | N/A | MAGEEVALAEVMNLLQTEPEPSGPVGGFVPTAPGPDIPALREQLAVLVSTGKAKEATGVQLTHEQVKRLSDKEVEKYTKRYETYVGSKTTESLIDSFIFLVSKTVGMSVKIKDIDAYQKELRNDYIINKELSNLAGNLALKCGRFLAAANAVFITTKHVDFSPQLPEQSHPSRDEHGYPLEGVD |
| Ga0126339_100034225 | F053793 | N/A | MSVVPESLRPTPSEKTVHGMKAERAVKRITFTPSEANPGNTLYVSVPKLNENEVLVPGSLALVFDIDLSGGHANNFLVQNVTRALVDRLVVKFASTILQD* |
| Ga0126339_100034229 | F085124 | N/A | MVVLTVVAQQNGETIYFEEPIPKVHFMKLISCSMYNSWDTLKREGSATLGDKGKDIALSVGKLLPGHYSLERIEREIDNLFAKYNYKLETAMNQPLGQLVVKNSGLRPIELDRDLAGLLGIGRKLQFINFVKRLRSPTTYFIHCHLIDTERNLFNGN* |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |