NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0126339_10022183

Scaffold Ga0126339_10022183


Overview

Basic Information
Taxon OID3300010033 Open in IMG/M
Scaffold IDGa0126339_10022183 Open in IMG/M
Source Dataset NameCoral microbial communities from Petempiche,Puerto Morelos, Mexico - Orbicella T R C metagenome
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4228
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (20.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Invertebrates → Cnidaria → Coral → Unclassified → Coral → Coral Microbial Communities From Various Locations To Study Host-Microbial Communication

Source Dataset Sampling Location
Location NamePetempiche,Puerto Morelos, Mexico
CoordinatesLat. (o)20.9047Long. (o)-86.8366Alt. (m)Depth (m)8
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F051693Metagenome / Metatranscriptome143N

Sequences

Protein IDFamilyRBSSequence
Ga0126339_100221835F051693N/AVKFIAKYTEENIENFNTRLISRGYPEQMVDKTLREVKYKDRKEALKQKSKIAEGTTTLCVGQFHSTVN

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