Scaffold Ga0126339_10056121

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0126339_10056121

Scaffold Ga0126339_10056121

Overview

Basic Information
Taxon OID	3300010033 Open in IMG/M
Scaffold ID	Ga0126339_10056121 Open in IMG/M
Source Dataset Name	Coral microbial communities from Petempiche,Puerto Morelos, Mexico - Orbicella T R C metagenome
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	2152
Total Scaffold Genes	6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (33.33%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Cnidaria → Anthozoa → Hexacorallia → Scleractinia → Faviina → Merulinidae → Orbicella → Orbicella faveolata	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Invertebrates → Cnidaria → Coral → Unclassified → Coral → Coral Microbial Communities From Various Locations To Study Host-Microbial Communication

Source Dataset Sampling Location
Location Name	Petempiche,Puerto Morelos, Mexico
Coordinates	Lat. (^o)	20.9047	Long. (^o)	-86.8366	Alt. (m)		Depth (m)	8
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F032145	Metagenome / Metatranscriptome	180	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0126339_100561216	F032145	N/A	MASIAIMIGGAVLNATAFIGGNYLARALGGGDKAALEEKKRHDKALEDYQTAYAKYTRDRTQLLDWIATNAQTKEQAKQNMTNTDYAFKLYNQAHPDEQMV

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