NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0126342_10145913

Scaffold Ga0126342_10145913


Overview

Basic Information
Taxon OID3300010034 Open in IMG/M
Scaffold IDGa0126342_10145913 Open in IMG/M
Source Dataset NameCoral microbial communities from Lord Howe Island, Old Settlement Bay, Australia - Cyphastrea 1 metagenome
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1445
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Invertebrates → Cnidaria → Coral → Unclassified → Coral → Coral Microbial Communities From Various Locations To Study Host-Microbial Communication

Source Dataset Sampling Location
Location NameLord Howe Island, Old Settlement Bay, Australia
CoordinatesLat. (o)-31.55Long. (o)159.0833Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005840Metagenome / Metatranscriptome388Y

Sequences

Protein IDFamilyRBSSequence
Ga0126342_101459131F005840N/AVFLGSDTVAMVTYCVTKVTTACSTMAGQFFDVMIVAP
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