NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0126304_10045776

Scaffold Ga0126304_10045776


Overview

Basic Information
Taxon OID3300010037 Open in IMG/M
Scaffold IDGa0126304_10045776 Open in IMG/M
Source Dataset NameSerpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot25
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2640
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (40.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil → Serpentine Soil Microbial Communities From Uc Mclaughlin Reserve, Ca, Usa

Source Dataset Sampling Location
Location NameUC McLaughlin Reserve (Lake County, CA)
CoordinatesLat. (o)38.8693Long. (o)-122.4282Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003935Metagenome / Metatranscriptome461Y
F024192Metagenome207Y

Sequences

Protein IDFamilyRBSSequence
Ga0126304_100457762F003935AGGAGMDEEMLPKIDYHIDQPDPDVVILRRQDGTFVAAFSARGATTEGLLEAAKEDYGRLIEANADLLDLRGDGARKRSA*
Ga0126304_100457764F024192AGCAGVHPFIILLLLAGIMLCCLGVLLSLPLSAPDGSDVPGVASALAGANVGHVNRGANAPAPLPNGSYPLSPAEEVQQTDRHPVNASLLTMLVLACSFGASILRTLLTNARRQGATCSWIGDDRRWLSVVYEEPSFLGVFRL*
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