Scaffold Ga0126304_10335473

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0126304_10335473

Scaffold Ga0126304_10335473

Overview

Basic Information
Taxon OID	3300010037 Open in IMG/M
Scaffold ID	Ga0126304_10335473 Open in IMG/M
Source Dataset Name	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot25
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1004
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (33.33%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces → unclassified Streptomyces → Streptomyces sp. Tu6071	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil → Serpentine Soil Microbial Communities From Uc Mclaughlin Reserve, Ca, Usa

Source Dataset Sampling Location
Location Name	UC McLaughlin Reserve (Lake County, CA)
Coordinates	Lat. (^o)	38.8693	Long. (^o)	-122.4282	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F007444	Metagenome / Metatranscriptome	351	Y
F064074	Metagenome / Metatranscriptome	129	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0126304_103354732	F007444	GGAGG	MRSKTLAKLLLVLAGLLVLTVPAASAAETLVLTCTKCTELIVTGKDLPANTRVRVGVVDVKTGQETTNQFYVQTDANGAFIKKIPMDLGEHPTLESTVWKEDTNNVLVVAAHSRFTAPCKPEDTLAFTGSHTPLLLGLGLVLLAAGGLLVRGSRRAYPAH*
Ga0126304_103354733	F064074	N/A	EAAELADEVISRLNRNIRDERLFLALRDYTIASQACRREASP*

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