NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0126309_10187829

Scaffold Ga0126309_10187829


Overview

Basic Information
Taxon OID3300010039 Open in IMG/M
Scaffold IDGa0126309_10187829 Open in IMG/M
Source Dataset NameSerpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot56
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1136
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil → Serpentine Soil Microbial Communities From Uc Mclaughlin Reserve, Ca, Usa

Source Dataset Sampling Location
Location NameUC McLaughlin Reserve (Lake County, CA)
CoordinatesLat. (o)38.8707Long. (o)-122.4274Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001183Metagenome / Metatranscriptome755Y
F001264Metagenome / Metatranscriptome735Y
F012099Metagenome / Metatranscriptome283Y

Sequences

Protein IDFamilyRBSSequence
Ga0126309_101878292F001183GGAGGLSEEEQRQRVRELVHKNTGMDWPELTVAEIEKAMSSVTLFYWGTKEEVGKRWHQKQLELTDEEAESIGV*
Ga0126309_101878293F001264AGGAGMRAEQTVKEMAQVVLWRQAKAQAQRTGQSHASARAAVVQTPAGSQLEELRCGPHQDEQTRYWQANLLFERVSEQAGHPVHPV*
Ga0126309_101878294F012099N/ATSTTTTCSRCGAYLGTFVNDIREREVRLPDNLTHPWFYDARERAQQHTHDEAAHHEGSRWRYNDITAAPNEE*
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