NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0126308_10046354

Scaffold Ga0126308_10046354


Overview

Basic Information
Taxon OID3300010040 Open in IMG/M
Scaffold IDGa0126308_10046354 Open in IMG/M
Source Dataset NameSerpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot55
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2507
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil → Serpentine Soil Microbial Communities From Uc Mclaughlin Reserve, Ca, Usa

Source Dataset Sampling Location
Location NameUC McLaughlin Reserve (Lake County, CA)
CoordinatesLat. (o)38.8708Long. (o)-122.4274Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F024965Metagenome203Y
F059701Metagenome / Metatranscriptome133Y
F104242Metagenome100Y

Sequences

Protein IDFamilyRBSSequence
Ga0126308_100463541F059701AGGAGMVEESVQKVRDKALRMLKHMRMQTFGQPAPYVEVRGAAINIGVVPGGSECDGLVDELLRDGHLQRYPSPSLTE
Ga0126308_100463542F104242AGGAGVDYERTPWAKRRSEQRKRDAALRYSLEMESRKLGWGDPALVYDEEKDLFRFTDGRFAFSREHADWELLRKKGRMKEL*
Ga0126308_100463543F024965N/ALWDLTVQGIWEAHLNGKLAEADVVDQVAVRAAGVLAEKGYWTWMFQAATEDLTSWQDLDWNYWMVDPNNGCIWE*
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