NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0126312_10061465

Scaffold Ga0126312_10061465


Overview

Basic Information
Taxon OID3300010041 Open in IMG/M
Scaffold IDGa0126312_10061465 Open in IMG/M
Source Dataset NameSerpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot104A
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2525
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (71.43%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil → Serpentine Soil Microbial Communities From Uc Mclaughlin Reserve, Ca, Usa

Source Dataset Sampling Location
Location NameUC McLaughlin Reserve (Lake County, CA)
CoordinatesLat. (o)38.8723Long. (o)-122.427Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F012851Metagenome276Y
F023050Metagenome211Y
F095025Metagenome105Y

Sequences

Protein IDFamilyRBSSequence
Ga0126312_100614655F023050GGAGMRSWIRRLERDARGHLESFELLDGSTYYYDRLEICRELFLHAYDVQLGDAHKWPEPPEILSKMCEARDVAAVLERFKPENPQVAFVNVAELFDTDALIHKRRLVPLLAVEPPEDLSE*
Ga0126312_100614656F095025GAGMGLRGKLRRLEDRAQAIATQTQEDQKLERERAIMRMILDEFARLKARGELSDADPLAQAVRNVVAAQYADLGEESCQYIAEGWIETLRELTRLDWIVKAGRNGAPHA*
Ga0126312_100614657F012851GGAGGLAKCAGITQAGTACKGIPIDGSQWCYVHHPDHVEERRRHGSKGGKRGGRGRPIAELGALRDENAEIRRRLLKGELPPNVAAVAVQSINTDIRAVGATLKAREQEELVERLEGLEEALEQRKAEHRYGA*
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