NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0126380_10006082

Scaffold Ga0126380_10006082


Overview

Basic Information
Taxon OID3300010043 Open in IMG/M
Scaffold IDGa0126380_10006082 Open in IMG/M
Source Dataset NameTropical forest soil microbial communities from Panama - MetaG Plot_26
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5146
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (50.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Thermomonosporaceae(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil → Tropical Forest Soil Microbial Communities From Panama Analyzed To Predict Greenhouse Gas Emissions

Source Dataset Sampling Location
Location NamePanama
CoordinatesLat. (o)9.1086Long. (o)-79.8436Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F028963Metagenome / Metatranscriptome190Y
F033576Metagenome / Metatranscriptome177Y
F060884Metagenome / Metatranscriptome132Y

Sequences

Protein IDFamilyRBSSequence
Ga0126380_100060823F060884AGGMSKEWAEDAARKEVPTVNNLGGYAVATDTYAYLAVAGACPRGELLAQLGQDGSGFAAARTLMRSEVVAAWPRMQQLQKYPFTTHGAVINGAKSGPHRAWDPV*
Ga0126380_100060825F028963N/AVKKLRAHEGRYAMYANTRQASEYQRDLLARAQKQRQVARVLALRKAARRVARAERRLVAAQTGVLRARADLVS*
Ga0126380_100060827F033576N/AVDDLAKLRQDYPAWTFGSVWATVASGPDVRRLWASRDGVLLTAWSAAELARDIRREEQASF*
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