NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0126380_10168767

Scaffold Ga0126380_10168767


Overview

Basic Information
Taxon OID3300010043 Open in IMG/M
Scaffold IDGa0126380_10168767 Open in IMG/M
Source Dataset NameTropical forest soil microbial communities from Panama - MetaG Plot_26
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1426
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil → Tropical Forest Soil Microbial Communities From Panama Analyzed To Predict Greenhouse Gas Emissions

Source Dataset Sampling Location
Location NamePanama
CoordinatesLat. (o)9.1086Long. (o)-79.8436Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F032401Metagenome180Y
F038595Metagenome / Metatranscriptome165Y
F068176Metagenome125Y

Sequences

Protein IDFamilyRBSSequence
Ga0126380_101687672F038595AGGAMYILFSLLIPFALLHHGFNSIALKIVSRIKSGPKYWCETLKK*
Ga0126380_101687673F032401GGAMKPMKLAEVREHTGRRLTVEEAAQYVSPGQSATVTRNQACALSLHPWSNTATDWLRLEACLVLLADKRRRK*
Ga0126380_101687674F068176N/AMTRRDREDPMSLQTAQAFLDGLPRMRAALRDNRHALGPVAYARHMHELDIDERDARAILRRAQLRVVAGTIFDE*
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