Scaffold Ga0126311_10000143

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0126311_10000143

Scaffold Ga0126311_10000143

Overview

Basic Information
Taxon OID	3300010045 Open in IMG/M
Scaffold ID	Ga0126311_10000143 Open in IMG/M
Source Dataset Name	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot61
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	35558
Total Scaffold Genes	35 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	18 (51.43%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (33.33%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil → Serpentine Soil Microbial Communities From Uc Mclaughlin Reserve, Ca, Usa

Source Dataset Sampling Location
Location Name	UC McLaughlin Reserve (Lake County, CA)
Coordinates	Lat. (^o)	38.8712	Long. (^o)	-122.4276	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F004612	Metagenome / Metatranscriptome	431	Y
F028519	Metagenome	191	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0126311_1000014322	F028519	GGAG	MENKSKTFTWEWEDGETGEIRTIKIPMPNLDRDYDPSESREIILDRKPRLDNVKMPDWIEIIPPRKPN*
Ga0126311_1000014324	F004612	N/A	MQSLVVKISNPDTVHAIAEAAKRQGTTPEAAALKLLETAVLAQKPFEEIIEPIARSFDESGMSEAELDDLVKQTQKTIREERRRNK*
Ga0126311_1000014332	F004612	N/A	MQSLVVKISNPDTVHAIAEAAKRQGTTPEAAALELLETAVLAQKPFDEIVEPIARSFDDSGMSEEELDDLVKQTQKTIREERRRNK*

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