NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0126384_10058942

Scaffold Ga0126384_10058942


Overview

Basic Information
Taxon OID3300010046 Open in IMG/M
Scaffold IDGa0126384_10058942 Open in IMG/M
Source Dataset NameTropical forest soil microbial communities from Panama - MetaG Plot_36
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2681
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (71.43%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil → Tropical Forest Soil Microbial Communities From Panama Analyzed To Predict Greenhouse Gas Emissions

Source Dataset Sampling Location
Location NamePanama
CoordinatesLat. (o)9.1086Long. (o)-79.8436Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000590Metagenome / Metatranscriptome1005Y
F003429Metagenome / Metatranscriptome487Y
F038841Metagenome / Metatranscriptome165Y

Sequences

Protein IDFamilyRBSSequence
Ga0126384_100589423F038841N/AMSFTMTMTSFSNVQPLYKGFVVKINGRYWTVNIMMVGETTLALLAGNEPEE*
Ga0126384_100589425F003429GGAGGMGQHREFLTPEERARIMALQDLLIERFVEHREAVAEGQEERVRTAEAEIDRLLREKEEIEKWAAVGST*
Ga0126384_100589426F000590GGAGGMQSILNEAFEWLDRAEQAREVAGQLTDHGARKAVLALAESFDRLARAAATPAVLLRRELATKDKE*
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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