Basic Information | |
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Taxon OID | 3300010046 Open in IMG/M |
Scaffold ID | Ga0126384_10089997 Open in IMG/M |
Source Dataset Name | Tropical forest soil microbial communities from Panama - MetaG Plot_36 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 2236 |
Total Scaffold Genes | 4 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 2 (50.00%) |
Novel Protein Genes | 2 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (100.00%) |
Associated Families | 2 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria → Acidobacteria | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil → Tropical Forest Soil Microbial Communities From Panama Analyzed To Predict Greenhouse Gas Emissions |
Source Dataset Sampling Location | ||||||||
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Location Name | Panama | |||||||
Coordinates | Lat. (o) | 9.1086 | Long. (o) | -79.8436 | Alt. (m) | Depth (m) | 0 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F027614 | Metagenome | 194 | Y |
F046571 | Metagenome / Metatranscriptome | 151 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0126384_100899972 | F046571 | AGG | VSGVVWASLQQERRGWPICPKARGVEMTLYRWDSAERKFTPTSVKRAIRPGEGARGMRVEKGQRVRAEVATGDLLIQMIEGAWRMQIANSELTVRNDEAIIIPSGFSHSAEAIEDSFAVQMEDDQEHNTHDSRWAV* |
Ga0126384_100899973 | F027614 | AGG | MLVLRRALVVLLGVALMFSWSSVNARSVQERPKNTPDIITLLEKSGYSYSKVREGVWEIPGTGKNLKEFGIRLALADDVLLVMVKLADRKDVKLQPALMTRLLELNHKFDWIKLALSDDMLYLRMDTHVRLVDSQELKYLVEQIANATDETYPQIKQFVTGAK* |
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