NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0126373_10327583

Scaffold Ga0126373_10327583


Overview

Basic Information
Taxon OID3300010048 Open in IMG/M
Scaffold IDGa0126373_10327583 Open in IMG/M
Source Dataset NameTropical forest soil microbial communities from Panama - MetaG Plot_11
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1537
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil → Tropical Forest Soil Microbial Communities From Panama Analyzed To Predict Greenhouse Gas Emissions

Source Dataset Sampling Location
Location NamePanama
CoordinatesLat. (o)9.1086Long. (o)-79.8436Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001179Metagenome / Metatranscriptome756Y
F007375Metagenome / Metatranscriptome352Y
F018261Metagenome / Metatranscriptome236Y

Sequences

Protein IDFamilyRBSSequence
Ga0126373_103275831F007375AGGTGGMLIEKLAGGVVRVHTPIGPRYVMPSFLQRVYLLWMFRNFPILPHAVLSRRQQRLIDQMCGEQRFESRAYVEGMDEAPIIGTVE
Ga0126373_103275832F018261N/AMEKGTEVELVLILPPELTSGERCWVCCQATVVRVEEGPEFGVAAQIRRMDILPEAAV*
Ga0126373_103275833F001179N/AARVEYDKAIRFAQNEADRLTYGMQKAMTYVRDGNFAEADKQFEEVAGGAHAKEQGLQEAQAYRHLSEYQIDDSAAFKYLKLAEDALPEHSTTSPLDRDEEISRILRDRAVRESHSGNQEAARNTLTQLQTMANGSHNRVISSLYQGASGTVLMDQKNYGAAIPYLEEDQDNPFTLELLVQAYYQTSQNDKLHEVEVKLRGTNVPTMEQALVVPAARSRRPVI*
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