NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0123356_12036610

Scaffold Ga0123356_12036610


Overview

Basic Information
Taxon OID3300010049 Open in IMG/M
Scaffold IDGa0123356_12036610 Open in IMG/M
Source Dataset NameEmbiratermes neotenicus P3 segment gut microbial communities from Petit-Saut dam, French Guiana - Emb289 P3
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)716
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Arthropoda → Digestive System → Gut → Unclassified → Termite Gut → Cubitermes And Nasutitermes Termite Gut Microbial Communities From Max Planck Institute For Terrestrial Microbiology, Germany

Source Dataset Sampling Location
Location NamePetit - Saut dam, French Guiana
CoordinatesLat. (o)5.0626Long. (o)-53.0462Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003842Metagenome / Metatranscriptome466Y
F042049Metagenome / Metatranscriptome159N

Sequences

Protein IDFamilyRBSSequence
Ga0123356_120366101F042049N/AVRKNNKIFGTLPLTDPEDQLGFGDDLIEAFYKLTKDERTVVMSIVDRLKPGGTSYDFDNFDLQPAVLKLLTYHRLVLHNGHKQNSVLYARWLSSV
Ga0123356_120366102F003842AGAAGMVSAKETRTAAPETQKWSFSADGKPLSLDEFLETYKKQGIFFEGKEQWLKGVTKVSWENFFLVCTEELDDISQRAAKMLIHYCLEIVEDVVSRVRGPVDPAKIAEAMKREFDEQYDNPI
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