Scaffold Ga0133944_1000097

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0133944_1000097

Scaffold Ga0133944_1000097

Overview

Basic Information
Taxon OID	3300010052 Open in IMG/M
Scaffold ID	Ga0133944_1000097 Open in IMG/M
Source Dataset Name	Microbial community associated with the xenic strain of Eucapsis sp. UTEX 1529
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Oregon State University
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	393957
Total Scaffold Genes	341 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	262 (76.83%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. OHSU_III	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Unclassified → Unclassified → Unclassified → Liquid → Microbial Community Associated With The Xenic Strain Of Eucapsis Sp. Utex 1519

Source Dataset Sampling Location
Location Name	UTEX collection
Coordinates	Lat. (^o)		Long. (^o)		Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F002233	Metagenome / Metatranscriptome	580	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0133944_1000097193	F002233	AGGA	MRQVQSLLRNAPARIGRRLAQIVAIAAASLPQAGA*

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