NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0127494_1042395

Scaffold Ga0127494_1042395


Overview

Basic Information
Taxon OID3300010107 Open in IMG/M
Scaffold IDGa0127494_1042395 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Met_40_5_8_1 metaT (Metagenome Metatranscriptome)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1412
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → Viruses → Riboviria → Orthornavirae → Lenarviricota → Miaviricetes → Ourlivirales → Botourmiaviridae → Ourmiavirus → unclassified Ourmiavirus → Erysiphe necator associated ourmia-like virus 48(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameUSA: Angelo Coastal Reserve, California
CoordinatesLat. (o)39.7181Long. (o)-123.6527Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F015954Metagenome / Metatranscriptome250Y

Sequences

Protein IDFamilyRBSSequence
Ga0127494_10423951F015954N/AMMGSYLSFPLLCLHSYLAARWALAGRDGTILVNGDDTLVSSNVYLEASSYPSGYKLNDLKTIRSETVAEINSTAFLRNSKGKWREIRHLRRGGFLSDYHGMLHGAAAVRGSVEWTNAFVRSRIGKKWGFLPSQLGLNPRSYPAHERERSMSNRIFTCLPGPPTEASTSLLAVRRELDPDEKIAMFLHLWDHGREGGRKRDVFNPTVGCVRRTYAYRSVKVWSRLSYLGKLRSLKVTARREEEELRYLPADYVSKREDEILAELKRYNSEVFKDL*
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